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Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin

Identifieur interne : 000C84 ( Main/Exploration ); précédent : 000C83; suivant : 000C85

Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin

Auteurs : Peng Zhou [République populaire de Chine] ; Hang Fan [République populaire de Chine] ; Tian Lan [République populaire de Chine] ; Xing-Lou Yang [République populaire de Chine] ; Wei-Feng Shi [République populaire de Chine] ; Wei Zhang [République populaire de Chine] ; Yan Zhu [République populaire de Chine] ; Ya-Wei Zhang [République populaire de Chine] ; Qing-Mei Xie [République populaire de Chine] ; Shailendra Mani [Singapour] ; Xiao-Shuang Zheng [République populaire de Chine] ; Bei Li [République populaire de Chine] ; Jin-Man Li [République populaire de Chine] ; Hua Guo [République populaire de Chine] ; Guang-Qian Pei [République populaire de Chine] ; Xiao-Ping An [République populaire de Chine] ; Jun-Wei Chen [République populaire de Chine] ; Ling Zhou [République populaire de Chine] ; Kai-Jie Mai [République populaire de Chine] ; Zi-Xian Wu [République populaire de Chine] ; Di Li [République populaire de Chine] ; Danielle E. Anderson [Singapour] ; Li-Biao Zhang [République populaire de Chine] ; Shi-Yue Li [République populaire de Chine] ; Zhi-Qiang Mi [République populaire de Chine] ; Tong-Tong He [République populaire de Chine] ; Feng Cong [République populaire de Chine] ; Peng-Ju Guo [République populaire de Chine] ; Ren Huang [République populaire de Chine] ; Yun Luo [République populaire de Chine] ; Xiang-Ling Liu [République populaire de Chine] ; Jing Chen [République populaire de Chine] ; Yong Huang [République populaire de Chine] ; Qiang Sun [République populaire de Chine] ; Xiang-Li-Lan Zhang [République populaire de Chine] ; Yuan-Yuan Wang [République populaire de Chine] ; Shao-Zhen Xing [République populaire de Chine] ; Yan-Shan Chen [République populaire de Chine] ; Yuan Sun [République populaire de Chine] ; Juan Li [République populaire de Chine] ; Peter Daszak [États-Unis] ; Lin-Fa Wang [Singapour] ; Zheng-Li Shi [République populaire de Chine] ; Yi-Gang Tong [République populaire de Chine] ; Jing-Yun Ma [République populaire de Chine]

Source :

RBID : PMC:7094983

Descripteurs français

English descriptors

Abstract

Cross-species transmission of viruses from wildlife animal reservoirs poses a marked threat to human and animal health1. Bats have been recognized as one of the most important reservoirs for emerging viruses and the transmission of a coronavirus that originated in bats to humans via intermediate hosts was responsible for the high-impact emerging zoonosis, severe acute respiratory syndrome (SARS)210. Here we provide virological, epidemiological, evolutionary and experimental evidence that a novel HKU2-related bat coronavirus, swine acute diarrhoea syndrome coronavirus (SADS-CoV), is the aetiological agent that was responsible for a large-scale outbreak of fatal disease in pigs in China that has caused the death of 24,693 piglets across four farms. Notably, the outbreak began in Guangdong province in the vicinity of the origin of the SARS pandemic. Furthermore, we identified SADS-related CoVs with 96–98% sequence identity in 9.8% (58 out of 591) of anal swabs collected from bats in Guangdong province during 2013–2016, predominantly in horseshoe bats (Rhinolophus spp.) that are known reservoirs of SARS-related CoVs. We found that there were striking similarities between the SADS and SARS outbreaks in geographical, temporal, ecological and aetiological settings. This study highlights the importance of identifying coronavirus diversity and distribution in bats to mitigate future outbreaks that could threaten livestock, public health and economic growth.


Url:
DOI: 10.1038/s41586-018-0010-9
PubMed: 29618817
PubMed Central: 7094983


Affiliations:


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Le document en format XML

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Guangzhou, China</nlm:aff>
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Guangzhou, China</nlm:aff>
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Wuhan, China</nlm:aff>
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Wuhan, China</nlm:aff>
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Beijing, China</nlm:aff>
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</author>
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Beijing, China</nlm:aff>
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</author>
<author>
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</institution-wrap>
Guangzhou, China</nlm:aff>
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</placeName>
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</institution-wrap>
Taian, China</nlm:aff>
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</author>
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New York, NY USA</nlm:aff>
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<institution>Duke-NUS Medical School,</institution>
</institution-wrap>
Singapore, Singapore</nlm:aff>
<country xml:lang="fr">Singapour</country>
<wicri:regionArea>Singapore</wicri:regionArea>
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</author>
<author>
<name sortKey="Shi, Zheng Li" sort="Shi, Zheng Li" uniqKey="Shi Z" first="Zheng-Li" last="Shi">Zheng-Li Shi</name>
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</author>
<author>
<name sortKey="Tong, Yi Gang" sort="Tong, Yi Gang" uniqKey="Tong Y" first="Yi-Gang" last="Tong">Yi-Gang Tong</name>
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Tangshan, China</nlm:aff>
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Guangzhou, China</nlm:aff>
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<title xml:lang="en" level="a" type="main">Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin</title>
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<name sortKey="Zhou, Peng" sort="Zhou, Peng" uniqKey="Zhou P" first="Peng" last="Zhou">Peng Zhou</name>
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Wuhan, China</nlm:aff>
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Beijing, China</nlm:aff>
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Taian, China</nlm:aff>
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Wuhan, China</nlm:aff>
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Beijing, China</nlm:aff>
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<author>
<name sortKey="Xie, Qing Mei" sort="Xie, Qing Mei" uniqKey="Xie Q" first="Qing-Mei" last="Xie">Qing-Mei Xie</name>
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<institution>South China Agricultural University,</institution>
</institution-wrap>
Guangzhou, China</nlm:aff>
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</placeName>
</affiliation>
</author>
<author>
<name sortKey="Mani, Shailendra" sort="Mani, Shailendra" uniqKey="Mani S" first="Shailendra" last="Mani">Shailendra Mani</name>
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<institution>Duke-NUS Medical School,</institution>
</institution-wrap>
Singapore, Singapore</nlm:aff>
<country xml:lang="fr">Singapour</country>
<wicri:regionArea>Singapore</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Zheng, Xiao Shuang" sort="Zheng, Xiao Shuang" uniqKey="Zheng X" first="Xiao-Shuang" last="Zheng">Xiao-Shuang Zheng</name>
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Wuhan, China</nlm:aff>
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</author>
<author>
<name sortKey="Li, Bei" sort="Li, Bei" uniqKey="Li B" first="Bei" last="Li">Bei Li</name>
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Wuhan, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Wuhan</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Li, Jin Man" sort="Li, Jin Man" uniqKey="Li J" first="Jin-Man" last="Li">Jin-Man Li</name>
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<institution>Beijing Institute of Microbiology and Epidemiology,</institution>
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Beijing, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Guo, Hua" sort="Guo, Hua" uniqKey="Guo H" first="Hua" last="Guo">Hua Guo</name>
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<nlm:aff id="Aff1">
<institution-wrap>
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Wuhan, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Wuhan</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Pei, Guang Qian" sort="Pei, Guang Qian" uniqKey="Pei G" first="Guang-Qian" last="Pei">Guang-Qian Pei</name>
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<nlm:aff id="Aff2">
<institution-wrap>
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<institution>Beijing Institute of Microbiology and Epidemiology,</institution>
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Beijing, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="An, Xiao Ping" sort="An, Xiao Ping" uniqKey="An X" first="Xiao-Ping" last="An">Xiao-Ping An</name>
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<nlm:aff id="Aff2">
<institution-wrap>
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<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Beijing Institute of Microbiology and Epidemiology,</institution>
</institution-wrap>
Beijing, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Chen, Jun Wei" sort="Chen, Jun Wei" uniqKey="Chen J" first="Jun-Wei" last="Chen">Jun-Wei Chen</name>
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<nlm:aff id="Aff3">
<institution-wrap>
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<institution-id institution-id-type="GRID">grid.20561.30</institution-id>
<institution>College of Animal Science,</institution>
<institution>South China Agricultural University,</institution>
</institution-wrap>
Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Guangzhou</wicri:regionArea>
</affiliation>
<affiliation wicri:level="3">
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou</wicri:regionArea>
<placeName>
<settlement type="city">Jiangmen</settlement>
<region type="province">Guangdong</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Zhou, Ling" sort="Zhou, Ling" uniqKey="Zhou L" first="Ling" last="Zhou">Ling Zhou</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff3">
<institution-wrap>
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<institution>College of Animal Science,</institution>
<institution>South China Agricultural University,</institution>
</institution-wrap>
Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Guangzhou</wicri:regionArea>
</affiliation>
<affiliation wicri:level="3">
<nlm:aff id="Aff4">Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou</wicri:regionArea>
<placeName>
<settlement type="city">Jiangmen</settlement>
<region type="province">Guangdong</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Mai, Kai Jie" sort="Mai, Kai Jie" uniqKey="Mai K" first="Kai-Jie" last="Mai">Kai-Jie Mai</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff3">
<institution-wrap>
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<institution-id institution-id-type="GRID">grid.20561.30</institution-id>
<institution>College of Animal Science,</institution>
<institution>South China Agricultural University,</institution>
</institution-wrap>
Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Guangzhou</wicri:regionArea>
</affiliation>
<affiliation wicri:level="3">
<nlm:aff id="Aff4">Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou</wicri:regionArea>
<placeName>
<settlement type="city">Jiangmen</settlement>
<region type="province">Guangdong</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Wu, Zi Xian" sort="Wu, Zi Xian" uniqKey="Wu Z" first="Zi-Xian" last="Wu">Zi-Xian Wu</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff3">
<institution-wrap>
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<institution-id institution-id-type="GRID">grid.20561.30</institution-id>
<institution>College of Animal Science,</institution>
<institution>South China Agricultural University,</institution>
</institution-wrap>
Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Guangzhou</wicri:regionArea>
</affiliation>
<affiliation wicri:level="3">
<nlm:aff id="Aff4">Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou</wicri:regionArea>
<placeName>
<settlement type="city">Jiangmen</settlement>
<region type="province">Guangdong</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Li, Di" sort="Li, Di" uniqKey="Li D" first="Di" last="Li">Di Li</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff3">
<institution-wrap>
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<institution-id institution-id-type="GRID">grid.20561.30</institution-id>
<institution>College of Animal Science,</institution>
<institution>South China Agricultural University,</institution>
</institution-wrap>
Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Guangzhou</wicri:regionArea>
</affiliation>
<affiliation wicri:level="3">
<nlm:aff id="Aff4">Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou</wicri:regionArea>
<placeName>
<settlement type="city">Jiangmen</settlement>
<region type="province">Guangdong</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Anderson, Danielle E" sort="Anderson, Danielle E" uniqKey="Anderson D" first="Danielle E." last="Anderson">Danielle E. Anderson</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff6">
<institution-wrap>
<institution-id institution-id-type="ISNI">0000 0004 0385 0924</institution-id>
<institution-id institution-id-type="GRID">grid.428397.3</institution-id>
<institution>Programme in Emerging Infectious Diseases,</institution>
<institution>Duke-NUS Medical School,</institution>
</institution-wrap>
Singapore, Singapore</nlm:aff>
<country xml:lang="fr">Singapour</country>
<wicri:regionArea>Singapore</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Zhang, Li Biao" sort="Zhang, Li Biao" uniqKey="Zhang L" first="Li-Biao" last="Zhang">Li-Biao Zhang</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff7">
<institution-wrap>
<institution-id institution-id-type="ISNI">0000 0004 6431 5677</institution-id>
<institution-id institution-id-type="GRID">grid.464309.c</institution-id>
<institution>Guangdong Key Laboratory of Animal Conservation and Resource Utilization, Guangdong Public Laboratory of Wild Animal Conservation and Utilization,</institution>
<institution>Guangdong Institute of Applied Biological Resources,</institution>
</institution-wrap>
Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Guangzhou</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Li, Shi Yue" sort="Li, Shi Yue" uniqKey="Li S" first="Shi-Yue" last="Li">Shi-Yue Li</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff8">
<institution-wrap>
<institution-id institution-id-type="ISNI">0000 0001 2331 6153</institution-id>
<institution-id institution-id-type="GRID">grid.49470.3e</institution-id>
<institution>School of Public Health,</institution>
<institution>Wuhan University,</institution>
</institution-wrap>
Wuhan, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Wuhan</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Mi, Zhi Qiang" sort="Mi, Zhi Qiang" uniqKey="Mi Z" first="Zhi-Qiang" last="Mi">Zhi-Qiang Mi</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff2">
<institution-wrap>
<institution-id institution-id-type="ISNI">0000 0000 8803 2373</institution-id>
<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Beijing Institute of Microbiology and Epidemiology,</institution>
</institution-wrap>
Beijing, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="He, Tong Tong" sort="He, Tong Tong" uniqKey="He T" first="Tong-Tong" last="He">Tong-Tong He</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff2">
<institution-wrap>
<institution-id institution-id-type="ISNI">0000 0000 8803 2373</institution-id>
<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Beijing Institute of Microbiology and Epidemiology,</institution>
</institution-wrap>
Beijing, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Cong, Feng" sort="Cong, Feng" uniqKey="Cong F" first="Feng" last="Cong">Feng Cong</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff9">
<institution-wrap>
<institution-id institution-id-type="GRID">grid.464317.3</institution-id>
<institution>Guangdong Key Laboratory of Laboratory Animals,</institution>
<institution>Guangdong Laboratory Animals Monitoring Institute,</institution>
</institution-wrap>
Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Guangzhou</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Guo, Peng Ju" sort="Guo, Peng Ju" uniqKey="Guo P" first="Peng-Ju" last="Guo">Peng-Ju Guo</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff9">
<institution-wrap>
<institution-id institution-id-type="GRID">grid.464317.3</institution-id>
<institution>Guangdong Key Laboratory of Laboratory Animals,</institution>
<institution>Guangdong Laboratory Animals Monitoring Institute,</institution>
</institution-wrap>
Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Guangzhou</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Huang, Ren" sort="Huang, Ren" uniqKey="Huang R" first="Ren" last="Huang">Ren Huang</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff9">
<institution-wrap>
<institution-id institution-id-type="GRID">grid.464317.3</institution-id>
<institution>Guangdong Key Laboratory of Laboratory Animals,</institution>
<institution>Guangdong Laboratory Animals Monitoring Institute,</institution>
</institution-wrap>
Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Guangzhou</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Luo, Yun" sort="Luo, Yun" uniqKey="Luo Y" first="Yun" last="Luo">Yun Luo</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff1">
<institution-wrap>
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<institution-id institution-id-type="GRID">grid.9227.e</institution-id>
<institution>CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology,</institution>
<institution>Chinese Academy of Sciences,</institution>
</institution-wrap>
Wuhan, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Wuhan</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Liu, Xiang Ling" sort="Liu, Xiang Ling" uniqKey="Liu X" first="Xiang-Ling" last="Liu">Xiang-Ling Liu</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff1">
<institution-wrap>
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<institution-id institution-id-type="GRID">grid.9227.e</institution-id>
<institution>CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology,</institution>
<institution>Chinese Academy of Sciences,</institution>
</institution-wrap>
Wuhan, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Wuhan</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Chen, Jing" sort="Chen, Jing" uniqKey="Chen J" first="Jing" last="Chen">Jing Chen</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff1">
<institution-wrap>
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<institution-id institution-id-type="GRID">grid.9227.e</institution-id>
<institution>CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology,</institution>
<institution>Chinese Academy of Sciences,</institution>
</institution-wrap>
Wuhan, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Wuhan</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Huang, Yong" sort="Huang, Yong" uniqKey="Huang Y" first="Yong" last="Huang">Yong Huang</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff2">
<institution-wrap>
<institution-id institution-id-type="ISNI">0000 0000 8803 2373</institution-id>
<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Beijing Institute of Microbiology and Epidemiology,</institution>
</institution-wrap>
Beijing, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Sun, Qiang" sort="Sun, Qiang" uniqKey="Sun Q" first="Qiang" last="Sun">Qiang Sun</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff2">
<institution-wrap>
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<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Beijing Institute of Microbiology and Epidemiology,</institution>
</institution-wrap>
Beijing, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Zhang, Xiang Li Lan" sort="Zhang, Xiang Li Lan" uniqKey="Zhang X" first="Xiang-Li-Lan" last="Zhang">Xiang-Li-Lan Zhang</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff2">
<institution-wrap>
<institution-id institution-id-type="ISNI">0000 0000 8803 2373</institution-id>
<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Beijing Institute of Microbiology and Epidemiology,</institution>
</institution-wrap>
Beijing, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Wang, Yuan Yuan" sort="Wang, Yuan Yuan" uniqKey="Wang Y" first="Yuan-Yuan" last="Wang">Yuan-Yuan Wang</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff2">
<institution-wrap>
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<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Beijing Institute of Microbiology and Epidemiology,</institution>
</institution-wrap>
Beijing, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Xing, Shao Zhen" sort="Xing, Shao Zhen" uniqKey="Xing S" first="Shao-Zhen" last="Xing">Shao-Zhen Xing</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff2">
<institution-wrap>
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<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Beijing Institute of Microbiology and Epidemiology,</institution>
</institution-wrap>
Beijing, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Chen, Yan Shan" sort="Chen, Yan Shan" uniqKey="Chen Y" first="Yan-Shan" last="Chen">Yan-Shan Chen</name>
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<institution>College of Animal Science,</institution>
<institution>South China Agricultural University,</institution>
</institution-wrap>
Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Guangzhou</wicri:regionArea>
</affiliation>
<affiliation wicri:level="3">
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou</wicri:regionArea>
<placeName>
<settlement type="city">Jiangmen</settlement>
<region type="province">Guangdong</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Sun, Yuan" sort="Sun, Yuan" uniqKey="Sun Y" first="Yuan" last="Sun">Yuan Sun</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff3">
<institution-wrap>
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<institution>College of Animal Science,</institution>
<institution>South China Agricultural University,</institution>
</institution-wrap>
Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Guangzhou</wicri:regionArea>
</affiliation>
<affiliation wicri:level="3">
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou</wicri:regionArea>
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<settlement type="city">Jiangmen</settlement>
<region type="province">Guangdong</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Li, Juan" sort="Li, Juan" uniqKey="Li J" first="Juan" last="Li">Juan Li</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff5">
<institution-wrap>
<institution-id institution-id-type="ISNI">0000 0000 8910 6733</institution-id>
<institution-id institution-id-type="GRID">grid.410638.8</institution-id>
<institution>Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases in Universities of Shandong,</institution>
<institution>Taishan Medical College,</institution>
</institution-wrap>
Taian, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Taian</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Daszak, Peter" sort="Daszak, Peter" uniqKey="Daszak P" first="Peter" last="Daszak">Peter Daszak</name>
<affiliation wicri:level="2">
<nlm:aff id="Aff10">
<institution-wrap>
<institution-id institution-id-type="ISNI">0000 0004 0409 4702</institution-id>
<institution-id institution-id-type="GRID">grid.420826.a</institution-id>
<institution>EcoHealth Alliance,</institution>
</institution-wrap>
New York, NY USA</nlm:aff>
<country>États-Unis</country>
<placeName>
<region type="state">État de New York</region>
</placeName>
<wicri:cityArea>New York</wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Wang, Lin Fa" sort="Wang, Lin Fa" uniqKey="Wang L" first="Lin-Fa" last="Wang">Lin-Fa Wang</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff6">
<institution-wrap>
<institution-id institution-id-type="ISNI">0000 0004 0385 0924</institution-id>
<institution-id institution-id-type="GRID">grid.428397.3</institution-id>
<institution>Programme in Emerging Infectious Diseases,</institution>
<institution>Duke-NUS Medical School,</institution>
</institution-wrap>
Singapore, Singapore</nlm:aff>
<country xml:lang="fr">Singapour</country>
<wicri:regionArea>Singapore</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Shi, Zheng Li" sort="Shi, Zheng Li" uniqKey="Shi Z" first="Zheng-Li" last="Shi">Zheng-Li Shi</name>
<affiliation wicri:level="1">
<nlm:aff id="Aff1">
<institution-wrap>
<institution-id institution-id-type="ISNI">0000000119573309</institution-id>
<institution-id institution-id-type="GRID">grid.9227.e</institution-id>
<institution>CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology,</institution>
<institution>Chinese Academy of Sciences,</institution>
</institution-wrap>
Wuhan, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Wuhan</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Tong, Yi Gang" sort="Tong, Yi Gang" uniqKey="Tong Y" first="Yi-Gang" last="Tong">Yi-Gang Tong</name>
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<institution-wrap>
<institution-id institution-id-type="ISNI">0000 0000 8803 2373</institution-id>
<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Beijing Institute of Microbiology and Epidemiology,</institution>
</institution-wrap>
Beijing, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
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<nlm:aff id="Aff11">
<institution-wrap>
<institution-id institution-id-type="ISNI">0000 0001 0707 0296</institution-id>
<institution-id institution-id-type="GRID">grid.440734.0</institution-id>
<institution>School of Life Sciences,</institution>
<institution>North China University of Science and Technology,</institution>
</institution-wrap>
Tangshan, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Tangshan</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Ma, Jing Yun" sort="Ma, Jing Yun" uniqKey="Ma J" first="Jing-Yun" last="Ma">Jing-Yun Ma</name>
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<institution-wrap>
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<institution>South China Agricultural University,</institution>
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Guangzhou, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Guangzhou</wicri:regionArea>
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<country xml:lang="fr">République populaire de Chine</country>
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</author>
</analytic>
<series>
<title level="j">Nature</title>
<idno type="ISSN">0028-0836</idno>
<idno type="eISSN">1476-4687</idno>
<imprint>
<date when="2018">2018</date>
</imprint>
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<term>Alphacoronavirus (classification)</term>
<term>Alphacoronavirus (genetics)</term>
<term>Alphacoronavirus (isolation & purification)</term>
<term>Alphacoronavirus (pathogenicity)</term>
<term>Animal Diseases (epidemiology)</term>
<term>Animal Diseases (transmission)</term>
<term>Animal Diseases (virology)</term>
<term>Animals</term>
<term>Biodiversity</term>
<term>China (epidemiology)</term>
<term>Chiroptera (virology)</term>
<term>Coronavirus Infections (epidemiology)</term>
<term>Coronavirus Infections (transmission)</term>
<term>Coronavirus Infections (veterinary)</term>
<term>Diarrhea (pathology)</term>
<term>Diarrhea (veterinary)</term>
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<term>Disease Reservoirs (virology)</term>
<term>Genome, Viral (genetics)</term>
<term>Humans</term>
<term>Jejunum (pathology)</term>
<term>Jejunum (virology)</term>
<term>Phylogeny</term>
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<term>Severe Acute Respiratory Syndrome (veterinary)</term>
<term>Severe Acute Respiratory Syndrome (virology)</term>
<term>Spatio-Temporal Analysis</term>
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<term>Zoonoses (epidemiology)</term>
<term>Zoonoses (transmission)</term>
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<term>Analyse spatio-temporelle</term>
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<term>Biodiversité</term>
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<term>Diarrhée (virologie)</term>
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<term>Humains</term>
<term>Infections à coronavirus (médecine vétérinaire)</term>
<term>Infections à coronavirus (transmission)</term>
<term>Infections à coronavirus (épidémiologie)</term>
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<term>Syndrome respiratoire aigu sévère (virologie)</term>
<term>Syndrome respiratoire aigu sévère (épidémiologie)</term>
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<term>Zoonoses (virologie)</term>
<term>Zoonoses (épidémiologie)</term>
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<term>Diarrhée</term>
<term>Jéjunum</term>
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<term>Alphacoronavirus</term>
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<term>Animal Diseases</term>
<term>China</term>
<term>Coronavirus Infections</term>
<term>Severe Acute Respiratory Syndrome</term>
<term>Zoonoses</term>
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<term>Alphacoronavirus</term>
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<term>Animal Diseases</term>
<term>Coronavirus Infections</term>
<term>Zoonoses</term>
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<term>Coronavirus Infections</term>
<term>Diarrhea</term>
<term>Disease Reservoirs</term>
<term>Severe Acute Respiratory Syndrome</term>
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<term>Chiroptera</term>
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<term>Réservoirs d'agents pathogènes</term>
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<term>Chine</term>
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<term>Zoonoses</term>
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<term>Biodiversity</term>
<term>Humans</term>
<term>Phylogeny</term>
<term>Spatio-Temporal Analysis</term>
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<term>Analyse spatio-temporelle</term>
<term>Animaux</term>
<term>Biodiversité</term>
<term>Humains</term>
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<front>
<div type="abstract" xml:lang="en">
<p id="Par1">Cross-species transmission of viruses from wildlife animal reservoirs poses a marked threat to human and animal health
<sup>
<xref ref-type="bibr" rid="CR1">1</xref>
</sup>
. Bats have been recognized as one of the most important reservoirs for emerging viruses and the transmission of a coronavirus that originated in bats to humans via intermediate hosts was responsible for the high-impact emerging zoonosis, severe acute respiratory syndrome (SARS)
<sup>
<xref ref-type="bibr" rid="CR2">2</xref>
<xref ref-type="bibr" rid="CR10">10</xref>
</sup>
. Here we provide virological, epidemiological, evolutionary and experimental evidence that a novel HKU2-related bat coronavirus, swine acute diarrhoea syndrome coronavirus (SADS-CoV), is the aetiological agent that was responsible for a large-scale outbreak of fatal disease in pigs in China that has caused the death of 24,693 piglets across four farms. Notably, the outbreak began in Guangdong province in the vicinity of the origin of the SARS pandemic. Furthermore, we identified SADS-related CoVs with 96–98% sequence identity in 9.8% (58 out of 591) of anal swabs collected from bats in Guangdong province during 2013–2016, predominantly in horseshoe bats (
<italic>Rhinolophus</italic>
spp.) that are known reservoirs of SARS-related CoVs. We found that there were striking similarities between the SADS and SARS outbreaks in geographical, temporal, ecological and aetiological settings. This study highlights the importance of identifying coronavirus diversity and distribution in bats to mitigate future outbreaks that could threaten livestock, public health and economic growth.</p>
</div>
</front>
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</TEI>
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<country>
<li>République populaire de Chine</li>
<li>Singapour</li>
<li>États-Unis</li>
</country>
<region>
<li>Guangdong</li>
<li>État de New York</li>
</region>
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<li>Jiangmen</li>
</settlement>
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<name sortKey="Zhou, Peng" sort="Zhou, Peng" uniqKey="Zhou P" first="Peng" last="Zhou">Peng Zhou</name>
</noRegion>
<name sortKey="An, Xiao Ping" sort="An, Xiao Ping" uniqKey="An X" first="Xiao-Ping" last="An">Xiao-Ping An</name>
<name sortKey="Chen, Jing" sort="Chen, Jing" uniqKey="Chen J" first="Jing" last="Chen">Jing Chen</name>
<name sortKey="Chen, Jun Wei" sort="Chen, Jun Wei" uniqKey="Chen J" first="Jun-Wei" last="Chen">Jun-Wei Chen</name>
<name sortKey="Chen, Jun Wei" sort="Chen, Jun Wei" uniqKey="Chen J" first="Jun-Wei" last="Chen">Jun-Wei Chen</name>
<name sortKey="Chen, Yan Shan" sort="Chen, Yan Shan" uniqKey="Chen Y" first="Yan-Shan" last="Chen">Yan-Shan Chen</name>
<name sortKey="Chen, Yan Shan" sort="Chen, Yan Shan" uniqKey="Chen Y" first="Yan-Shan" last="Chen">Yan-Shan Chen</name>
<name sortKey="Cong, Feng" sort="Cong, Feng" uniqKey="Cong F" first="Feng" last="Cong">Feng Cong</name>
<name sortKey="Fan, Hang" sort="Fan, Hang" uniqKey="Fan H" first="Hang" last="Fan">Hang Fan</name>
<name sortKey="Guo, Hua" sort="Guo, Hua" uniqKey="Guo H" first="Hua" last="Guo">Hua Guo</name>
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<name sortKey="Huang, Ren" sort="Huang, Ren" uniqKey="Huang R" first="Ren" last="Huang">Ren Huang</name>
<name sortKey="Huang, Yong" sort="Huang, Yong" uniqKey="Huang Y" first="Yong" last="Huang">Yong Huang</name>
<name sortKey="Lan, Tian" sort="Lan, Tian" uniqKey="Lan T" first="Tian" last="Lan">Tian Lan</name>
<name sortKey="Lan, Tian" sort="Lan, Tian" uniqKey="Lan T" first="Tian" last="Lan">Tian Lan</name>
<name sortKey="Li, Bei" sort="Li, Bei" uniqKey="Li B" first="Bei" last="Li">Bei Li</name>
<name sortKey="Li, Di" sort="Li, Di" uniqKey="Li D" first="Di" last="Li">Di Li</name>
<name sortKey="Li, Di" sort="Li, Di" uniqKey="Li D" first="Di" last="Li">Di Li</name>
<name sortKey="Li, Jin Man" sort="Li, Jin Man" uniqKey="Li J" first="Jin-Man" last="Li">Jin-Man Li</name>
<name sortKey="Li, Juan" sort="Li, Juan" uniqKey="Li J" first="Juan" last="Li">Juan Li</name>
<name sortKey="Li, Shi Yue" sort="Li, Shi Yue" uniqKey="Li S" first="Shi-Yue" last="Li">Shi-Yue Li</name>
<name sortKey="Liu, Xiang Ling" sort="Liu, Xiang Ling" uniqKey="Liu X" first="Xiang-Ling" last="Liu">Xiang-Ling Liu</name>
<name sortKey="Luo, Yun" sort="Luo, Yun" uniqKey="Luo Y" first="Yun" last="Luo">Yun Luo</name>
<name sortKey="Ma, Jing Yun" sort="Ma, Jing Yun" uniqKey="Ma J" first="Jing-Yun" last="Ma">Jing-Yun Ma</name>
<name sortKey="Ma, Jing Yun" sort="Ma, Jing Yun" uniqKey="Ma J" first="Jing-Yun" last="Ma">Jing-Yun Ma</name>
<name sortKey="Mai, Kai Jie" sort="Mai, Kai Jie" uniqKey="Mai K" first="Kai-Jie" last="Mai">Kai-Jie Mai</name>
<name sortKey="Mai, Kai Jie" sort="Mai, Kai Jie" uniqKey="Mai K" first="Kai-Jie" last="Mai">Kai-Jie Mai</name>
<name sortKey="Mi, Zhi Qiang" sort="Mi, Zhi Qiang" uniqKey="Mi Z" first="Zhi-Qiang" last="Mi">Zhi-Qiang Mi</name>
<name sortKey="Pei, Guang Qian" sort="Pei, Guang Qian" uniqKey="Pei G" first="Guang-Qian" last="Pei">Guang-Qian Pei</name>
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<name sortKey="Shi, Zheng Li" sort="Shi, Zheng Li" uniqKey="Shi Z" first="Zheng-Li" last="Shi">Zheng-Li Shi</name>
<name sortKey="Sun, Qiang" sort="Sun, Qiang" uniqKey="Sun Q" first="Qiang" last="Sun">Qiang Sun</name>
<name sortKey="Sun, Yuan" sort="Sun, Yuan" uniqKey="Sun Y" first="Yuan" last="Sun">Yuan Sun</name>
<name sortKey="Sun, Yuan" sort="Sun, Yuan" uniqKey="Sun Y" first="Yuan" last="Sun">Yuan Sun</name>
<name sortKey="Tong, Yi Gang" sort="Tong, Yi Gang" uniqKey="Tong Y" first="Yi-Gang" last="Tong">Yi-Gang Tong</name>
<name sortKey="Tong, Yi Gang" sort="Tong, Yi Gang" uniqKey="Tong Y" first="Yi-Gang" last="Tong">Yi-Gang Tong</name>
<name sortKey="Wang, Yuan Yuan" sort="Wang, Yuan Yuan" uniqKey="Wang Y" first="Yuan-Yuan" last="Wang">Yuan-Yuan Wang</name>
<name sortKey="Wu, Zi Xian" sort="Wu, Zi Xian" uniqKey="Wu Z" first="Zi-Xian" last="Wu">Zi-Xian Wu</name>
<name sortKey="Wu, Zi Xian" sort="Wu, Zi Xian" uniqKey="Wu Z" first="Zi-Xian" last="Wu">Zi-Xian Wu</name>
<name sortKey="Xie, Qing Mei" sort="Xie, Qing Mei" uniqKey="Xie Q" first="Qing-Mei" last="Xie">Qing-Mei Xie</name>
<name sortKey="Xie, Qing Mei" sort="Xie, Qing Mei" uniqKey="Xie Q" first="Qing-Mei" last="Xie">Qing-Mei Xie</name>
<name sortKey="Xing, Shao Zhen" sort="Xing, Shao Zhen" uniqKey="Xing S" first="Shao-Zhen" last="Xing">Shao-Zhen Xing</name>
<name sortKey="Yang, Xing Lou" sort="Yang, Xing Lou" uniqKey="Yang X" first="Xing-Lou" last="Yang">Xing-Lou Yang</name>
<name sortKey="Zhang, Li Biao" sort="Zhang, Li Biao" uniqKey="Zhang L" first="Li-Biao" last="Zhang">Li-Biao Zhang</name>
<name sortKey="Zhang, Wei" sort="Zhang, Wei" uniqKey="Zhang W" first="Wei" last="Zhang">Wei Zhang</name>
<name sortKey="Zhang, Xiang Li Lan" sort="Zhang, Xiang Li Lan" uniqKey="Zhang X" first="Xiang-Li-Lan" last="Zhang">Xiang-Li-Lan Zhang</name>
<name sortKey="Zhang, Ya Wei" sort="Zhang, Ya Wei" uniqKey="Zhang Y" first="Ya-Wei" last="Zhang">Ya-Wei Zhang</name>
<name sortKey="Zheng, Xiao Shuang" sort="Zheng, Xiao Shuang" uniqKey="Zheng X" first="Xiao-Shuang" last="Zheng">Xiao-Shuang Zheng</name>
<name sortKey="Zhou, Ling" sort="Zhou, Ling" uniqKey="Zhou L" first="Ling" last="Zhou">Ling Zhou</name>
<name sortKey="Zhou, Ling" sort="Zhou, Ling" uniqKey="Zhou L" first="Ling" last="Zhou">Ling Zhou</name>
<name sortKey="Zhu, Yan" sort="Zhu, Yan" uniqKey="Zhu Y" first="Yan" last="Zhu">Yan Zhu</name>
</country>
<country name="Singapour">
<noRegion>
<name sortKey="Mani, Shailendra" sort="Mani, Shailendra" uniqKey="Mani S" first="Shailendra" last="Mani">Shailendra Mani</name>
</noRegion>
<name sortKey="Anderson, Danielle E" sort="Anderson, Danielle E" uniqKey="Anderson D" first="Danielle E." last="Anderson">Danielle E. Anderson</name>
<name sortKey="Wang, Lin Fa" sort="Wang, Lin Fa" uniqKey="Wang L" first="Lin-Fa" last="Wang">Lin-Fa Wang</name>
</country>
<country name="États-Unis">
<region name="État de New York">
<name sortKey="Daszak, Peter" sort="Daszak, Peter" uniqKey="Daszak P" first="Peter" last="Daszak">Peter Daszak</name>
</region>
</country>
</tree>
</affiliations>
</record>

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